VeteranST
Data Upload
Tissue Domain Assignment
DVGs Exploration
DVGs based Tissue Analysis
Spatial Expression Pattern Clustering
STEP 1. Load Data
Expression Matrix(.csv)
Browse...
Spot Coordinates(.csv)
Browse...
Tissue Spots
STEP 2. Assign Tissue Domain
Brush/Eraser Size
Set the rest as a new domain
Initialize
Download Cluster Assignments
Tissue Domain Assignment
STEP 3. Explore DVGs
FWER Threshold:
Tissue Domain Criteria:
Brush-assigned Tissue Domain
Predefined Tissue Domain
Plot Adjustment
Point Size:
Point Transparency:
DVGs
Special DVGs
STEP 4. DVGs-Tissue Analysis
Run tests in 'Test Results' tab first.
Tissue Domain Variability
Variability Ranking
Post-hoc Analysis(Nemenyi)
STEP 5. Spatial Expression Pattern Clustering
Min Cluster Size:
Run tests in 'Test Results' tab first.
Point Size:
Point Transparency: